Search for any model, metabolite or reaction by BiGG ID or name.

To search for entries linked to external identifiers, use the format [namespace]:[identifier]. Possible namespaces are: (auto indicates the the enitity type is automatically derived from the identifier.)

  • CHEBI
    • Ex: CHEBI:17790
  • RHEA
    • Ex: RHEA:16505
  • InChIKey
    • The rightmost two parts of the InChIKey can optionally be omitted to search for compounds with different protonation states and different stereochemistries.
    • Ex: InChiKey:ZKHQWZAMYRWXGA-KQYNXXCUSA-J, InChiKey:ZKHQWZAMYRWXGA-KQYNXXCUSA, InChiKey:ZKHQWZAMYRWXGA-
  • EC / ec-code
    • Partial EC-codes can be provided, optionally with an asterix at the end.
    • Ex: ec-code:4.1.3.27, EC:4.1.3.*,
  • seed (auto), seed.compound, seed.reaction
    • Identifiers can also be entered directly.
    • Ex: cpd00023, seed:cpd00023, seed.reaction:rxn00126
  • kegg (auto), kegg.compound, kegg.reaction
    • Ex: kegg.compound:C00062, kegg:R01086
  • metacyc (auto), metacyc.compound, metacyc.reaction
    • Ex: metacyc:VAL, metacyc:BRANCHED-CHAINAMINOTRANSFERVAL-RXN
  • metanetx (auto), metanetx.chemical, metanetx.reaction
    • Identifiers can also be entered directly.
    • Ex: metanetx:MNXR100289, MNXR100289

BiGG
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Collections(40)
iECx6 (E. coli) iML1515 (E. coli MG1655) iPKB_Clostridiaceae All Collections
Models(4,881)
iML1515 (E. coli MG1655) iMM904 (S. cereviseae S288S) iPC815 (Y. pestis CO92) All Models
Metabolites(2,441)
glc__D (D-glucopyranose) atp (ATP) arg__L (L-Arginine) All Metabolites
Reactions(7,322)
ATPM (ATP Mainenance) ALLTN (Allantoinase) ARGDC (Arg. Decarboxylase) All Reactions
Genomes(4,857)
GCF_000005845.2 GCF_000009065.1 GCF_000146045.2 All Genomes
Compartments(22)
c (Cytosol) p (Periplasm) e (Extracellular Space) All Compartments
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BRIGHT
The Novo Nordisk Foundation Biotechnology Research Institute for the Green Transition
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